Saturday, 04 July 2015

IPPSC 2015, Day 3: Latest technologies in storage environment

IPPSC 2015, Day 3: Latest technologies in storage ...

Friday, June 19 was the third and final day of the International Potato Processing and Storage Conve...

IPPSC 2015, Day 2: Potato Industry Directions

IPPSC 2015, Day 2: Potato Industry Directions

After a first day abundant in knowledgeable talks on current and future matters of the processing ...

IPPSC 2015, Day 1: Newest Advances in Potato Processing

IPPSC 2015, Day 1: Newest Advances in Potato Proce...

Wednesday, June 17 was the first day of the International Potato Processing and Storage Convention...

ConAgra Foods intending to exit private label market

ConAgra Foods intending to exit private label market

In a report issued on June 30, ConAgra Foods, Inc. reported results for this year’s fourth quarter, whi...

EFSA formulates scientific point of view on acrylamide issue

EFSA formulates scientific point of view on acrylamide ...

On June 4 this year, the European Food Safety Authority (EFSA) released its official opinion on acrylam...

Kraft Heinz Company has a new senior leadership team

Kraft Heinz Company has a new senior leadership team

  The Kraft Heinz Company announced its new senior leadership team that marks another major milestone ...

Italian snack manufacturer chooses integrated solutions from tna

Italian snack manufacturer chooses integrated solutions...

  Leading Italian snack manufacturer Pata was able to reduce waste, simplify cleaning operations and i...

TOMRA equips its Belgian test and demo center with a new cold room

TOMRA equips its Belgian test and demo center with a ne...

  The equipment producer TOMRA Sorting Solutions is now able to test the performance of its sorting ma...

Key Technology launches new mobile-friendly website

Key Technology launches new mobile-friendly website

  Key Technology announces the launch of its redesigned corporate website with a new responsive versio...

McCain Australia launches a limited edition range of flavored frozen potato wedges

McCain Australia lau...

  McCain Australia has recently launched the new wedges ‘...

Tolsma-Grisnich and Kiremko, partnership for a new plant in China

Tolsma-Grisnich and ...

  Strategic partners Tolsma-Grisnich and Kiremko recently...

Utz Quality Foods launches Specialty Division

Utz Quality Foods la...

Utz Quality Foods, Inc. has recently announced the culmina...

Potatoes are back on WIC, a nutritional program for women, infants and children in USA

Potatoes are back on...

The National Potato Council (NPC) from USA succeeded to put ...

Exclusive interview with the director of Urschel Laboratories, Inc: The Urschel team is a very strong one

Exclusive interview ...

What began with one man's invention more than 100 years ago ...

UK Potato Council says it is a record year for seed potato exports

UK Potato Council sa...

  Seed potato exports are booming, with the latest figure...

Indian Government will procure 6,600 tones of potato from farmers

Indian Government wi...

The State Government announced its decision to procure 6,6...

Company launches a new solution for potato sprouting

Company launches a n...

  BioSafe Systems announces the introduction of ARRET Spr...

Seed Industry Event conference tackles key industry concerns

Seed Industry Event ...

The recent Seed Industry Event, organized by British Potato ...

Armenia registered an important growth in potato exports in 2014

Armenia registered a...

Armenian potato exports totaled about 20,600 tons, compared ...

An innovative 'one stop shop' germplasm potato database resource is now available for scientists online.

The International Potato Center (known by its Spanish acronym CIP) has published a new online database for the potato and sweetpotato.

The database is searchable for more than 90 attributes related to the germplasm held in CIP's extensive genebank collections. The database took more than two years to develop, and is the first of its kind to apply a scheme originally used for housing genomics data to a genebank collection.

"It is the holy grail of the genebank and breeding information managers' community - having a data search facility for different kinds of data," says Reinhard Simon, head of CIP's Research Informatics Unit.

In recent decades, bioinformatics - the application of information technology to better understand biological processes - has been focused primarily on management systems that can deal with the enormous amount of information generated by rapid developments in molecular biology. CIP took one such system, BioMart, and created a novel application allowing integrated searches across a wide range of different data types.

"The kind of information we need is often still housed in specific databases. With this system, potentially all the evaluation data you can think of can be combined; it's a one stop shop," says Simon.

The new database includes what is called passport data, such as the origin and availability of germplasm, compliant with the standard MCPD (multicrop passport descriptor list). With characterisation data organised according to crop specific international standards, users can search for any specific traits they are looking for (e.g., drought tolerance or chipping quality) using morphological characteristics or biotic and abiotic evaluation data. Also included are molecular marker data (SSR), and the entire list of worldwide distributions of CIP held germplasm.

The flexibility of the system allows for a range of information from summary reports to detailed, accession-level information. It has a user-friendly, three-step interface, requiring little or no training. If needed, support is provided on the CIP site and by an online BioMart tutorial. Breeders, scientists, or curators who want to order germplasm from the CIP's genebank can do so via a hyperlink using a 'shopping cart' system, similar to online shopping sites.

The database also provides an important new springboard for further research. The potential is vast, explains Simon, "Curators from other genebanks sometimes need or want to corroborate information, and scientists and other researchers can use all these data for further analysis and for documenting biodiversity."

The database will be updated as new data are released and is available at www.cipotato.org/research/genebank/search

 

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