Thursday, 23 November 2017

Agritechnica 2017 Presents Latest Technologies for Cropping and Storing

Agritechnica 2017 Presents Latest Technologies for...

  For seven days, between November 12 and 18, at Agritechnica 2017, high-caliber manufacturers an...

British Potato 2017 Event Plots UK Role after Brexit

British Potato 2017 Event Plots UK Role after Brex...

  BP2017 Potato Industry Show is a potato gathering from seed to supermarket, taking place Novemb...

Potato Expo Announces Topics and Speakers for January Edition

Potato Expo Announces Topics and Speakers for Janu...

  Potato Expo has announced the sessions and speakers for the January 10-12, 2018 event, to be he...

Avebe Records Growth in Performance Price

Avebe Records Growth in Performance Price

  Coöperatie Avebe achieved a performance price of more than EUR82, meaning it is almost 7% higher tha...

Belgium Potato Processors to Join Indonesian Food Expo

Belgium Potato Processors to Join Indonesian Food Expo

  The Belgian Potato Trade and Processing Industry Federation (Belgapom) will take part in the major I...

tna Expands China Operations

tna Expands China Operations

  tna announces the opening of TNA Solutions (Shanghai) Co. Ltd to provide local food manufacturers wi...

New Tools for Growers to Be Launched at British Potato 2017

New Tools for Growers to Be Launched at British Potato ...

    British Potato 2017 is an occasion for launching and introducing working tools for growers. The eve...

Tolsma-Grisnich Delivers Potato Grading Machines to German Processing Plant

Tolsma-Grisnich Delivers Potato Grading Machines to Ger...

  Tolsma-Grisnich has recently commissioned new grading machines at Golden-Geest-Kartoffeln Erzeugerge...

Omnivent Launches New Line of OmniFans for Potato Storages

Omnivent Launches New Line of OmniFans for Potato Stora...

  Omnivent launches a new line of OmniFans with the Permanent Magnet (PM) engine techniques which pres...

Chicken Rice, Laksa-flavored Potato Chips to Launch in Singapore

Chicken Rice, Laksa-...

  Two new flavors of potato chips - Hainanese Chicken Ric...

Asda’s New Wagyu Beef Dripping Potatoes

Asda’s New Wagyu Bee...

  British retailer Asda has introduced Extra Special Wagy...

Boulder Canyon Brings Back Seasonal Potato Chips Flavors

Boulder Canyon Bring...

  Turkey Gravy and Pumpkin Pie kettle-cooked potato chi...

Branston’s Italian Potatoes Are Again Available in Tesco Stores

Branston’s Italian P...

  Italian new potatoes supplied by Branston were availabl...

ITC Enters the Fresh  Produce Market with Innovative Potatoes

ITC Enters the Fresh...

  Indian company ITC Ltd has entered the fresh fruits and...

Frito-Lay Launches New Autumn Flavor Brands

Frito-Lay Launches N...

  PepsiCo's Frito-Lay division announces new brands - the...

Innovative Potato Products Presented at Anuga 2017

Innovative Potato Pr...

  Potato producers exhibited a range of innovative produc...

Potandon Launches Low-carb Innovation in Fresh Potato Category

Potandon Launches Lo...

During the Produce Marketing Association’s Fresh Summit co...

PepsiCo Increases Production Capacity in Moscow Region

PepsiCo Increases Pr...

  PepsiCo launched a new Lay’s potato chips production li...

DARS Starts Cleaning Potatoes of Viruses to Improve Production

DARS Starts Cleaning...

    The Department of Agriculture Research Services in Mal...

Czech Potato Research Institute Cultivates Blue Potato Variety

Czech Potato Researc...

  The Potato Research Institute, based in the town of Hav...

British Potato Producer Builds Potato Store in Marsham

British Potato Produ...

  A potato producer has applied for permission to build a...

National Potato Council Awards Adrienne Gorny for Potato Research

National Potato Coun...

  The National Potato Council (NPC) announces that Adrien...

Solynta Develops Late Blight Resistant Potato Varieties

Solynta Develops Lat...

  Dutch potato breeding company Solynta has developed pot...

Hydroponic Potatoes Might Be Grown inside Europe’s Deepest Metal Mine

Hydroponic Potatoes ...

  A research team recently launched a pilot project to in...

Cornell University Publishes Organic Production and IPM Guide for Potatoes

Cornell University P...

  The practical potato production Guide was compiled by a...

Canada Approves Three New Types of GMO Potatoes

Canada Approves Thre...

  Three types of potatoes genetically engineered by an Id...

Cavendish Farms to Build Two New Modern Storage Facilities

Cavendish Farms to B...

  Prince Edwards Island's major potato processor Cavendis...

An innovative 'one stop shop' germplasm potato database resource is now available for scientists online.

The International Potato Center (known by its Spanish acronym CIP) has published a new online database for the potato and sweetpotato.

The database is searchable for more than 90 attributes related to the germplasm held in CIP's extensive genebank collections. The database took more than two years to develop, and is the first of its kind to apply a scheme originally used for housing genomics data to a genebank collection.

"It is the holy grail of the genebank and breeding information managers' community - having a data search facility for different kinds of data," says Reinhard Simon, head of CIP's Research Informatics Unit.

In recent decades, bioinformatics - the application of information technology to better understand biological processes - has been focused primarily on management systems that can deal with the enormous amount of information generated by rapid developments in molecular biology. CIP took one such system, BioMart, and created a novel application allowing integrated searches across a wide range of different data types.

"The kind of information we need is often still housed in specific databases. With this system, potentially all the evaluation data you can think of can be combined; it's a one stop shop," says Simon.

The new database includes what is called passport data, such as the origin and availability of germplasm, compliant with the standard MCPD (multicrop passport descriptor list). With characterisation data organised according to crop specific international standards, users can search for any specific traits they are looking for (e.g., drought tolerance or chipping quality) using morphological characteristics or biotic and abiotic evaluation data. Also included are molecular marker data (SSR), and the entire list of worldwide distributions of CIP held germplasm.

The flexibility of the system allows for a range of information from summary reports to detailed, accession-level information. It has a user-friendly, three-step interface, requiring little or no training. If needed, support is provided on the CIP site and by an online BioMart tutorial. Breeders, scientists, or curators who want to order germplasm from the CIP's genebank can do so via a hyperlink using a 'shopping cart' system, similar to online shopping sites.

The database also provides an important new springboard for further research. The potential is vast, explains Simon, "Curators from other genebanks sometimes need or want to corroborate information, and scientists and other researchers can use all these data for further analysis and for documenting biodiversity."

The database will be updated as new data are released and is available at www.cipotato.org/research/genebank/search

 



Digital edition


Click or tap to view our digital magazine
on your tablet or mobile device.

Latest Events

Jan 10th 2018 - Jan 13th 2018
Potato Expo

Trade Media Solutions S.R.L. | 1-5 G-ral David Praporgescu Str., 1st Floor, District 2, 020965 Bucharest, Romania.
Tel: +40 (0) 21 31 590 31  | E-mail: office@mediatrade.ro